In Depth Variant Analysis: c.1165T>C (p.Cys389Arg)

  c.1165T>C
p.Cys389Arg (Legacy AA No. 329)
Mutation Type:
Point
Domain:
Serine Protease
Codon Change:
TGT > CGT
Mutation Effect:
Missense
Location:
Exon(9)
No of bases:
1
No. of patients reported:
1

Patient Information : Show

Residue Information :

  Name Type Cyclic Size Hydrophobicity Charge
Wild Type
Cys
-
acyclic
medium
hydrophilic
neutral
Mutated
Arg
basic
acyclic
large
hydrophilic
postive

Substitution Analysis :

  • Grantham Score : 180
  • PolyPhen-2 Prediction : probably damaging (Probability: 1)
  • SIFT Prediction :Damaging (SCORE: 0.000)
  • PROVEAN (Protein Variation Effect Analyzer) Prediction : Deleterious (SCORE: -11.70)

  • Structural Implications :

  • Cys389 is shown below as a red sphere.
  • Cys389 is a buried residue(the surface accessibility from the FVII structure is 0).
  • Cys389is in a region of secondary structure within the FVII domains (the DSSP assignment from the modelled FVII domains is E).
  • The substitution involves a conserved cysteine residue that forms a disulphide bridge. Breakage of this disulphide bridge may have serious effects on the stability of the domain.

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    Factor VII Variant Database